Bioinformatics Core

Analysis

APPLICATION

SOFTWARE PACKAGES

GENOME & TRANSCRIPTOME ASSEMBLY

ABySS, SOAP

(Eukaryote)

Velvet

(Prokaryote)

Trinity

(Transcriptome)

Newbler

(454)

ALIGNMENT/MAPPING

Novoalign

TopHat

BOWTIE

BWA

EXPRESSION ANALYSIS

Cufflinks

DESeq

edgeR

METAGENOMICS

MG-RAST

MEGAN

EPIGENETICS

SICER

DANPOS2

Useq

MeDUSA

VARIANT ANALYSIS (SNP, InDel, CNV)

SAMtools

CNVSeq

Bioinformatics Core

Director: Jyothi Thimmapuram, Ph.D.

Email: jyothit@purdue.edu

Phone: (765) 496-6252

Contact

Bioinformatics Core
Young Hall 1022
155 South Grant Street
West Lafayette, Indiana 47907